Unpacking the distribution files¶
The rDock source files and test suite files are provided as independent gzipped tar (.tar.gz) distributions. Depending on your requirements, the two distributions can be unpacked to entirely separate locations, or can be unpacked under the same location. In this example they are unpacked under the same location.
rDock source distribution
Test suite data files and scripts
[TEST] will vary depending on the release and test
[CODELINE] represents the major version string (for example, 2013.1)
[TEST] represents the given dataset (ASTEX, RNA or DUD).
Example unpacking procedure¶
Create a new directory for building rDock.
$ mkdir ~/dev
The directory you created is referred to as
[BUILDDIR] in the subsequent
Copy or download the distribution files to
$ cp ~/mydownloads/rDock_2013.1_src.tar.gz ~/dev/
Extract the distributions.
$ cd ~/dev/ $ tar -xvzf rdock_2013.1_src.tar.gz
The distributions contain files with relative path names, and you should find
the following subdirectories created under
rDock_[CODELINE]_src. Note that
./rDock_2013.1_src subdirectory may have a different name depending on
the major version string (see above).
$ find . -type d . ./fw ./src ./src/daylight ./src/lib ./src/exe ./src/GP ./build ./build/test ./build/test/RBT_HOME ./build/tmakelib ./build/tmakelib/linux-pathCC-64 ./build/tmakelib/linux-g++-64 ./build/tmakelib/linux-g++ ./build/tmakelib/unix ./data ./data/filters ./data/sf ./data/pmf ./data/pmf/smoothed ./data/scripts ./lib ./import ./import/tnt ./import/tnt/include ./import/simplex ./import/simplex/src ./import/simplex/include ./docs ./docs/images ./docs/newDocs ./include ./include/GP ./bin
Make a note of the following locations for later use.
The rDock root directory is
[BUILDDIR]/rDock_[CODELINE]_src and will be
referred to as
[RBT_ROOT] in later instructions. In this example,